Index

A

acquire() (fabio.fabioutils.DebugSemaphore method) add() (fabio.fabioimage.FabioImage method) AdscImage (class in fabio.adscimage)

adscimage (in module fabio.adscimage) appendFrame() (fabio.edfimage.EdfImage method) ascii_header() (fabio.mar345image.Mar345Image method)

B

basic_translate() (fabio.brukerimage.BrukerImage method) benchmarks() (in module fabio) BINARAY_SECTION (fabio.cbfimage.CbfImage attribute) binary_header() (fabio.mar345image.Mar345Image method) BINARY_MARKER (fabio.cbfimage.CIF attribute) BinaryImage (class in fabio.binaryimage) binaryimage (in module fabio.binaryimage) BLANK (fabio.cbfimage.CIF attribute) blocked (fabio.fabioutils.DebugSemaphore attribute) bpp (fabio.edfimage.EdfImage attribute) (fabio.fabioimage.FabioImage attribute)

bpp_to_numpy (fabio.bruker100image.Bruker100Image attribute) (fabio.brukerimage.BrukerImage attribute) Bruker100Image (class in fabio.bruker100image) bruker100image (in module fabio.bruker100image) BrukerImage (class in fabio.brukerimage) brukerimage (in module fabio.brukerimage) BUFFER_SIZE (fabio.fit2dimage.Fit2dImage attribute) bytecode (fabio.edfimage.EdfImage attribute) (fabio.edfimage.Frame attribute) (fabio.fabioimage.FabioImage attribute) BytesIO (class in fabio.fabioutils) BZ2File (class in fabio.fabioutils)

C

calc_bpp() (fabio.brukerimage.BrukerImage method) CbfImage (class in fabio.cbfimage) cbfimage (in module fabio.cbfimage) check_data() (fabio.fabioimage.FabioImage static method) (fabio.fit2dmaskimage.Fit2dMaskImage static method) (fabio.pnmimage.PnmImage static method) check_header() (fabio.edfimage.EdfImage static method) (fabio.fabioimage.FabioImage static method) checkData() (fabio.cbfimage.CbfImage static method) (fabio.OXDimage.OxdImage static method) (fabio.kcdimage.KcdImage static method) (fabio.mar345image.Mar345Image static method) CIF (class in fabio.cbfimage) CIF_BINARY_BLOCK_KEY (fabio.cbfimage.CbfImage attribute) classname (fabio.fabioimage.FabioImage attribute) close() (fabio.fabioimage.FabioImage method) (fabio.TiffIO.TiffIO method) (fabio.fabioutils.File method) (fabio.tifimage.TifImage method)

codec_name() (fabio.fabioimage.FabioImage class method) columnfile (class in fabio.datIO) COMMANDS (fabio.compression.ExternalCompressors attribute) compByteOffset() (in module fabio.compression) compByteOffset_cython() (in module fabio.compression) compByteOffset_numpy() (in module fabio.compression) compPCK() (in module fabio.compression) compTY1() (in module fabio.compression) construct_filename() (in module fabio.fabioutils) convert() (fabio.fabioimage.FabioImage method) convert_data() (in module fabio.converters) convert_data_integer() (in module fabio.converters) convert_header() (in module fabio.converters) current() (fabio.file_series.file_series method) (fabio.file_series.filename_series method) current_image() (fabio.file_series.file_series method) (fabio.file_series.filename_series method) current_object() (fabio.file_series.file_series method) (fabio.file_series.filename_series method)

D

DATA (fabio.cbfimage.CIF attribute) data (fabio.edfimage.EdfImage attribute) (fabio.edfimage.Frame attribute) DebugSemaphore (class in fabio.fabioutils) dec_TY5() (fabio.OXDimage.OxdImage method) decByteOffset() (in module fabio.compression) decByteOffset_cython() (in module fabio.compression) decByteOffset_numpy() (in module fabio.compression) decBzip2() (in module fabio.compression) decGzip() (in module fabio.compression) decKM4CCD() (in module fabio.compression) deconstruct_filename() (fabio.fabioutils.FilenameObject method) (in module fabio.fabioutils) decPCK() (in module fabio.compression) decTY1() (in module fabio.compression) decZlib() (in module fabio.compression) DEFAULT_EXTENSIONS (fabio.adscimage.AdscImage attribute) (fabio.GEimage.GeImage attribute) (fabio.HiPiCimage.HipicImage attribute) (fabio.OXDimage.OxdImage attribute) (fabio.binaryimage.BinaryImage attribute) (fabio.bruker100image.Bruker100Image attribute) (fabio.brukerimage.BrukerImage attribute) (fabio.cbfimage.CbfImage attribute) (fabio.dm3image.Dm3Image attribute) (fabio.edfimage.EdfImage attribute) (fabio.eigerimage.EigerImage attribute) (fabio.fit2dimage.Fit2dImage attribute) (fabio.fit2dmaskimage.Fit2dMaskImage attribute) (fabio.fit2dspreadsheetimage.Fit2dSpreadsheetImage attribute) (fabio.hdf5image.Hdf5Image attribute) (fabio.kcdimage.KcdImage attribute) (fabio.mar345image.Mar345Image attribute) (fabio.marccdimage.MarccdImage attribute) (fabio.mrcimage.MrcImage attribute) (fabio.numpyimage.NumpyImage attribute) (fabio.pilatusimage.PilatusImage attribute) (fabio.pixiimage.PixiImage attribute) (fabio.pnmimage.PnmImage attribute) (fabio.raxisimage.RaxisImage attribute) (fabio.tifimage.TifImage attribute) (fabio.xsdimage.XsdImage attribute)

delData() (fabio.edfimage.EdfImage method) deleteFrame() (fabio.edfimage.EdfImage method) delHeader() (fabio.edfimage.EdfImage method) demo() (in module fabio.GEimage) (in module fabio.pixiimage) deprecated() (in module fabio.fabioutils) DESCRIPTION (fabio.adscimage.AdscImage attribute) (fabio.GEimage.GeImage attribute) (fabio.HiPiCimage.HipicImage attribute) (fabio.OXDimage.OxdImage attribute) (fabio.binaryimage.BinaryImage attribute) (fabio.bruker100image.Bruker100Image attribute) (fabio.brukerimage.BrukerImage attribute) (fabio.cbfimage.CbfImage attribute) (fabio.dm3image.Dm3Image attribute) (fabio.edfimage.EdfImage attribute) (fabio.eigerimage.EigerImage attribute) (fabio.fit2dimage.Fit2dImage attribute) (fabio.fit2dmaskimage.Fit2dMaskImage attribute) (fabio.fit2dspreadsheetimage.Fit2dSpreadsheetImage attribute) (fabio.hdf5image.Hdf5Image attribute) (fabio.kcdimage.KcdImage attribute) (fabio.mar345image.Mar345Image attribute) (fabio.marccdimage.MarccdImage attribute) (fabio.mrcimage.MrcImage attribute) (fabio.numpyimage.NumpyImage attribute) (fabio.pilatusimage.PilatusImage attribute) (fabio.pixiimage.PixiImage attribute) (fabio.pnmimage.PnmImage attribute) (fabio.raxisimage.RaxisImage attribute) (fabio.tifimage.TifImage attribute) (fabio.xsdimage.XsdImage attribute) dim1 (fabio.edfimage.EdfImage attribute) (fabio.fabioimage.FabioImage attribute) dim2 (fabio.edfimage.EdfImage attribute) (fabio.fabioimage.FabioImage attribute) dims (fabio.edfimage.EdfImage attribute) Dm3Image (class in fabio.dm3image) dm3image (in module fabio.dm3image) do_magic() (in module fabio.openimage) DOUBLE_QUOTE (fabio.cbfimage.CIF attribute)

E

EdfImage (class in fabio.edfimage) edfimage (in module fabio.edfimage) EigerImage (class in fabio.eigerimage) eigerimage (in module fabio.eigerimage) ENC (fabio.fit2dimage.Fit2dImage attribute) endianness() (in module fabio.compression)

EOL (fabio.cbfimage.CIF attribute) estimate_offset_value() (fabio.binaryimage.BinaryImage method) exists() (fabio.cbfimage.CIF method) (in module fabio.fabioutils) existsInLoop() (fabio.cbfimage.CIF method) ExternalCompressors (class in fabio.compression) extract_filenumber() (in module fabio.fabioutils)

F

fabio (module) fabio.adscimage (module) fabio.binaryimage (module) fabio.bruker100image (module) fabio.brukerimage (module) fabio.cbfimage (module) fabio.compression (module) fabio.converters (module) fabio.datIO (module) fabio.dm3image (module) fabio.edfimage (module) fabio.eigerimage (module) fabio.fabioimage (module) fabio.fabioutils (module) fabio.file_series (module) fabio.fit2dimage (module) fabio.fit2dmaskimage (module) fabio.fit2dspreadsheetimage (module) fabio.GEimage (module) fabio.hdf5image (module) fabio.HiPiCimage (module) fabio.kcdimage (module) fabio.mar345image (module) fabio.marccdimage (module) fabio.mrcimage (module) fabio.numpyimage (module) fabio.openimage (module) fabio.OXDimage (module)

fabio.pilatusimage (module) fabio.pixiimage (module) fabio.pnmimage (module) fabio.raxisimage (module) fabio.readbytestream (module) fabio.TiffIO (module) fabio.tifimage (module) fabio.xsdimage (module) fabiodata (class in fabio.datIO) FabioImage (class in fabio.fabioimage) fabioimage (in module fabio.fabioimage) factory() (fabio.fabioimage.FabioImage class method) fastReadData() (fabio.edfimage.EdfImage method) fastReadROI() (fabio.edfimage.EdfImage method) File (class in fabio.fabioutils) file_series (class in fabio.file_series) filename_series (class in fabio.file_series) FilenameObject (class in fabio.fabioutils) first() (fabio.file_series.file_series method) first_image() (fabio.file_series.file_series method) first_object() (fabio.file_series.file_series method) Fit2dImage (class in fabio.fit2dimage) fit2dimage (in module fabio.fit2dimage) Fit2dMaskImage (class in fabio.fit2dmaskimage) fit2dmaskimage (in module fabio.fit2dmaskimage) Fit2dSpreadsheetImage (class in fabio.fit2dspreadsheetimage) fit2dspreadsheetimage (in module fabio.fit2dspreadsheetimage) Frame (class in fabio.edfimage)

G

GeImage (class in fabio.GEimage) GEimage (in module fabio.GEimage) gen_header() (fabio.bruker100image.Bruker100Image method) (fabio.brukerimage.BrukerImage method) gen_overflow() (fabio.bruker100image.Bruker100Image method) (fabio.brukerimage.BrukerImage method) gen_underflow100() (fabio.bruker100image.Bruker100Image method) get_bpp() (fabio.fabioimage.FabioImage method) get_bytecode() (fabio.fabioimage.FabioImage method) get_dim1() (fabio.fabioimage.FabioImage method) get_dim2() (fabio.fabioimage.FabioImage method) get_header_keys() (fabio.fabioimage.FabioImage method) getBpp() (fabio.edfimage.EdfImage method) getByteCode() (fabio.edfimage.EdfImage method) (fabio.edfimage.Frame method) getclassname() (fabio.fabioimage.FabioImage method) getCompressionRatio() (fabio.OXDimage.OxdImage method) getData() (fabio.edfimage.EdfImage method) (fabio.TiffIO.TiffIO method) (fabio.edfimage.Frame method) getDim1() (fabio.edfimage.EdfImage method) getDim2() (fabio.edfimage.EdfImage method) getDims() (fabio.edfimage.EdfImage method) getEdfBlock() (fabio.edfimage.Frame method) getframe() (fabio.edfimage.EdfImage method) (fabio.GEimage.GeImage method) (fabio.eigerimage.EigerImage method) (fabio.fabioimage.FabioImage method) (fabio.hdf5image.Hdf5Image method) (fabio.mrcimage.MrcImage method) (fabio.numpyimage.NumpyImage method) (fabio.pixiimage.PixiImage method) (fabio.tifimage.TifImage method)

getHeader() (fabio.edfimage.EdfImage method) getheader() (fabio.fabioimage.FabioImage method) getImage() (fabio.TiffIO.TiffIO method) getImageFileDirectories() (fabio.TiffIO.TiffIO method) getInfo() (fabio.TiffIO.TiffIO method) getmax() (fabio.fabioimage.FabioImage method) getmean() (fabio.fabioimage.FabioImage method) getmin() (fabio.fabioimage.FabioImage method) getNbFrames() (fabio.edfimage.EdfImage method) getnum() (in module fabio.fabioutils) getNumberOfImages() (fabio.TiffIO.TiffIO method) getSize() (fabio.fabioutils.BytesIO method) (fabio.OXDimage.Section method) (fabio.fabioutils.BZ2File method) (fabio.fabioutils.File method) getstddev() (fabio.fabioimage.FabioImage method) GLOBAL (fabio.cbfimage.CIF attribute) GzipFile (class in fabio.fabioutils)

H

HASH (fabio.cbfimage.CIF attribute) Hdf5Image (class in fabio.hdf5image) hdf5image (in module fabio.hdf5image) header (fabio.edfimage.EdfImage attribute) (fabio.pilatusimage.PilatusTiffFrame attribute) (fabio.tifimage.TiffFrame attribute)

header_keys (fabio.fabioimage.FabioImage attribute) HEADERS_KEYS (fabio.brukerimage.BrukerImage attribute) hex_to() (in module fabio.fit2dimage) HipicImage (class in fabio.HiPiCimage) HiPiCimage (in module fabio.HiPiCimage)

I

i (fabio.cbfimage.CIF attribute) incomplete_data (fabio.edfimage.EdfImage attribute) incomplete_file (fabio.edfimage.EdfImage attribute) (fabio.fabioimage.FabioImage attribute) integrate_area() (fabio.fabioimage.FabioImage method)

interpret_header() (in module fabio.marccdimage) is_incomplete_gz_block_exception() (in module fabio.compression) isAscii() (fabio.cbfimage.CIF static method) (in module fabio.fabioutils) isIncompleteData() (fabio.edfimage.EdfImage method)

J

jump() (fabio.file_series.file_series method) (fabio.file_series.filename_series method) jump_filename() (in module fabio.fabioutils)

jump_image() (fabio.file_series.file_series method) (fabio.file_series.filename_series method) jump_object() (fabio.file_series.file_series method) (fabio.file_series.filename_series method)

K

KcdImage (class in fabio.kcdimage)

kcdimage (in module fabio.kcdimage) KEYS (fabio.mrcimage.MrcImage attribute)

L

last() (fabio.file_series.file_series method) last_image() (fabio.file_series.file_series method) last_object() (fabio.file_series.file_series method) lazy_iterator() (fabio.edfimage.EdfImage class method) len() (fabio.file_series.file_series method)

load() (fabio.fabioimage.FabioImage method) loadCHIPLOT() (fabio.cbfimage.CIF method) loadCIF() (fabio.cbfimage.CIF method) LOOP (fabio.cbfimage.CIF attribute) LoopHasKey() (fabio.cbfimage.CIF static method)

M

make_format() (in module fabio.marccdimage) make_slice() (fabio.fabioimage.FabioImage method) MalformedHeaderError Mar345Image (class in fabio.mar345image) mar345image (in module fabio.mar345image)

MarccdImage (class in fabio.marccdimage) marccdimage (in module fabio.marccdimage) md5sum() (in module fabio.compression) measure_size() (fabio.fabioutils.GzipFile method) MrcImage (class in fabio.mrcimage) mrcimage (in module fabio.mrcimage)

N

nb_overflow_pixels() (fabio.mar345image.Mar345Image method) new_file_series() (in module fabio.file_series) new_file_series0() (in module fabio.file_series) next() (fabio.edfimage.EdfImage method) (fabio.GEimage.GeImage method) (fabio.eigerimage.EigerImage method) (fabio.fabioimage.FabioImage method) (fabio.file_series.file_series method) (fabio.file_series.filename_series method) (fabio.hdf5image.Hdf5Image method) (fabio.mrcimage.MrcImage method) (fabio.numpyimage.NumpyImage method) (fabio.pixiimage.PixiImage method)

next_filename() (in module fabio.fabioutils) next_image() (fabio.file_series.file_series method) (fabio.file_series.filename_series method) next_object() (fabio.file_series.file_series method) (fabio.file_series.filename_series method) nframes (fabio.edfimage.EdfImage attribute) nice_int() (in module fabio.fabioutils) NotGoodReader numbered_file_series (class in fabio.file_series) NumpyImage (class in fabio.numpyimage) numpyimage (in module fabio.numpyimage) numstem() (in module fabio.fabioutils)

O

openheader() (in module fabio.openimage) openimage() (in module fabio.openimage) OrderedDict (class in fabio.fabioutils)

overflows_one_byte() (fabio.bruker100image.Bruker100Image method) overflows_two_byte() (fabio.bruker100image.Bruker100Image method) OxdImage (class in fabio.OXDimage) OXDimage (in module fabio.OXDimage)

P

P1dec() (fabio.pnmimage.PnmImage method) P2dec() (fabio.pnmimage.PnmImage method) P3dec() (fabio.pnmimage.PnmImage method) P4dec() (fabio.pnmimage.PnmImage method) P5dec() (fabio.pnmimage.PnmImage method) P6dec() (fabio.pnmimage.PnmImage method) P7dec() (fabio.pnmimage.PnmImage method) pad() (in module fabio.fabioutils) PADDING (fabio.cbfimage.CbfImage attribute) parseheader() (fabio.edfimage.Frame method) PilatusImage (class in fabio.pilatusimage) pilatusimage (in module fabio.pilatusimage) PilatusTiffFrame (class in fabio.pilatusimage) PIXELS_PER_CHUNK (fabio.fit2dimage.Fit2dImage attribute) PixiImage (class in fabio.pixiimage) pixiimage (in module fabio.pixiimage) PnmImage (class in fabio.pnmimage)

pnmimage (in module fabio.pnmimage) pop() (fabio.cbfimage.CIF method) popitem() (fabio.cbfimage.CIF method) prev_image() (fabio.file_series.filename_series method) previous() (fabio.edfimage.EdfImage method) (fabio.GEimage.GeImage method) (fabio.eigerimage.EigerImage method) (fabio.fabioimage.FabioImage method) (fabio.file_series.file_series method) (fabio.file_series.filename_series method) (fabio.hdf5image.Hdf5Image method) (fabio.mrcimage.MrcImage method) (fabio.numpyimage.NumpyImage method) (fabio.pixiimage.PixiImage method) previous_filename() (in module fabio.fabioutils) previous_image() (fabio.file_series.file_series method) previous_object() (fabio.file_series.file_series method) (fabio.file_series.filename_series method)

Q

QUESTIONMARK (fabio.cbfimage.CIF attribute)

R

RaxisImage (class in fabio.raxisimage) raxisimage (in module fabio.raxisimage) read() (fabio.adscimage.AdscImage method) (fabio.GEimage.GeImage method) (fabio.HiPiCimage.HipicImage method) (fabio.OXDimage.OxdImage method) (fabio.binaryimage.BinaryImage method) (fabio.bruker100image.Bruker100Image method) (fabio.brukerimage.BrukerImage method) (fabio.cbfimage.CbfImage method) (fabio.datIO.columnfile method) (fabio.datIO.fabiodata method) (fabio.dm3image.Dm3Image method) (fabio.edfimage.EdfImage method) (fabio.eigerimage.EigerImage method) (fabio.fabioimage.FabioImage method) (fabio.fit2dimage.Fit2dImage method) (fabio.fit2dmaskimage.Fit2dMaskImage method) (fabio.fit2dspreadsheetimage.Fit2dSpreadsheetImage method) (fabio.hdf5image.Hdf5Image method) (fabio.kcdimage.KcdImage method) (fabio.mar345image.Mar345Image method) (fabio.mrcimage.MrcImage method) (fabio.numpyimage.NumpyImage method) (fabio.pixiimage.PixiImage method) (fabio.pnmimage.PnmImage method) (fabio.raxisimage.RaxisImage method) (fabio.tifimage.TifImage method) (fabio.xsdimage.XsdImage method)

read_data() (fabio.dm3image.Dm3Image method) read_raw_data() (fabio.cbfimage.CbfImage method) read_tag_entry() (fabio.dm3image.Dm3Image method) read_tag_group() (fabio.dm3image.Dm3Image method) read_tag_type() (fabio.dm3image.Dm3Image method) readbytes() (fabio.dm3image.Dm3Image method) readbytestream() (in module fabio.readbytestream) readCIF() (fabio.cbfimage.CIF method) readheader() (fabio.fabioimage.FabioImage method) readROI() (fabio.fabioimage.FabioImage method) rebin() (fabio.fabioimage.FabioImage method) register() (in module fabio) release() (fabio.fabioutils.DebugSemaphore method) RESERVED_HEADER_KEYS (fabio.edfimage.EdfImage attribute) (fabio.fabioimage.FabioImage attribute) resetvals() (fabio.fabioimage.FabioImage method) rigakuKeys() (fabio.raxisimage.RaxisImage method)

S

SAVE (fabio.cbfimage.CIF attribute) save() (fabio.fabioimage.FabioImage method) saveCIF() (fabio.cbfimage.CIF method) Section (class in fabio.OXDimage) SEMICOLUMN (fabio.cbfimage.CIF attribute) set_bpp() (fabio.fabioimage.FabioImage method) set_bytecode() (fabio.fabioimage.FabioImage method) set_dim1() (fabio.fabioimage.FabioImage method) set_dim2() (fabio.fabioimage.FabioImage method) set_header_keys() (fabio.fabioimage.FabioImage method) setBpp() (fabio.edfimage.EdfImage method) setByteCode() (fabio.edfimage.EdfImage method) (fabio.edfimage.Frame method) setData() (fabio.edfimage.EdfImage method) (fabio.OXDimage.Section method) (fabio.edfimage.Frame method) setDim1() (fabio.edfimage.EdfImage method) setDim2() (fabio.edfimage.EdfImage method) setHeader() (fabio.edfimage.EdfImage method)

setNbFrames() (fabio.edfimage.EdfImage method) setSize() (fabio.fabioutils.BytesIO method) (fabio.fabioutils.BZ2File method) (fabio.fabioutils.File method) SINGLE_QUOTE (fabio.cbfimage.CIF attribute) size (fabio.fabioutils.BytesIO attribute) (fabio.fabioutils.BZ2File attribute) (fabio.fabioutils.File attribute) slice_dataset() (fabio.numpyimage.NumpyImage method) SPACER (fabio.brukerimage.BrukerImage attribute) START_COMMENT (fabio.cbfimage.CIF attribute) STARTER (fabio.cbfimage.CbfImage attribute) STOP (fabio.cbfimage.CIF attribute) str() (fabio.fabioutils.FilenameObject method) swap_needed() (fabio.adscimage.AdscImage method) (fabio.binaryimage.BinaryImage static method) (fabio.edfimage.EdfImage method) (fabio.edfimage.Frame method) (fabio.raxisimage.RaxisImage method)

T

tests() (in module fabio) TiffFrame (class in fabio.tifimage) TiffIO (class in fabio.TiffIO) TifImage (class in fabio.tifimage) tifimage (in module fabio.tifimage)

toAscii() (in module fabio.fabioutils) toPIL16() (fabio.bruker100image.Bruker100Image method) (fabio.fabioimage.FabioImage method) tostring() (fabio.cbfimage.CIF method) (fabio.fabioutils.FilenameObject method)

U

underflows() (fabio.bruker100image.Bruker100Image method) UNDERSCORE (fabio.cbfimage.CIF attribute)

UnknownCompressedFile (class in fabio.fabioutils) unpack() (fabio.edfimage.EdfImage method) update_header() (fabio.fabioimage.FabioImage method)

V

version (fabio.bruker100image.Bruker100Image attribute) (fabio.brukerimage.BrukerImage attribute)

W

write() (fabio.adscimage.AdscImage method) (fabio.OXDimage.OxdImage method) (fabio.binaryimage.BinaryImage method) (fabio.bruker100image.Bruker100Image method) (fabio.brukerimage.BrukerImage method) (fabio.cbfimage.CbfImage method) (fabio.edfimage.EdfImage method) (fabio.eigerimage.EigerImage method) (fabio.fabioimage.FabioImage method) (fabio.fit2dmaskimage.Fit2dMaskImage method) (fabio.mar345image.Mar345Image method) (fabio.numpyimage.NumpyImage method) (fabio.pnmimage.PnmImage method) (fabio.tifimage.TifImage method)

write_lock (fabio.fabioutils.DebugSemaphore attribute) writeImage() (fabio.TiffIO.TiffIO method)

X

XsdImage (class in fabio.xsdimage)

xsdimage (in module fabio.xsdimage)