# coding: utf-8
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"""
:mod:`silx.gui.plot.actions.fit` module provides actions relative to fit.
The following QAction are available:
- :class:`.FitAction`
.. autoclass:`.FitAction`
"""
from __future__ import division
__authors__ = ["V.A. Sole", "T. Vincent", "P. Knobel"]
__license__ = "MIT"
__date__ = "10/10/2018"
import logging
import numpy
from .PlotToolAction import PlotToolAction
from .. import items
from ....utils.deprecation import deprecated
from silx.gui import qt
from silx.gui.plot.ItemsSelectionDialog import ItemsSelectionDialog
_logger = logging.getLogger(__name__)
def _getUniqueCurveOrHistogram(plot):
"""Returns unique :class:`Curve` or :class:`Histogram` in a `PlotWidget`.
If there is an active curve, returns it, else return curve or histogram
only if alone in the plot.
:param PlotWidget plot:
:rtype: Union[None,~silx.gui.plot.items.Curve,~silx.gui.plot.items.Histogram]
"""
curve = plot.getActiveCurve()
if curve is not None:
return curve
histograms = [item for item in plot.getItems()
if isinstance(item, items.Histogram) and item.isVisible()]
curves = [item for item in plot.getItems()
if isinstance(item, items.Curve) and item.isVisible()]
if len(histograms) == 1 and len(curves) == 0:
return histograms[0]
elif len(curves) == 1 and len(histograms) == 0:
return curves[0]
else:
return None
[docs]class FitAction(PlotToolAction):
"""QAction to open a :class:`FitWidget` and set its data to the
active curve if any, or to the first curve.
:param plot: :class:`.PlotWidget` instance on which to operate
:param parent: See :class:`QAction`
"""
def __init__(self, plot, parent=None):
self.__item = None
self.__activeCurveSynchroEnabled = False
self.__range = 0, 1
self.__rangeAutoUpdate = False
self.__x, self.__y = None, None # Data to fit
self.__curveParams = {} # Store curve parameters to use for fit result
self.__legend = None
super(FitAction, self).__init__(
plot, icon='math-fit', text='Fit curve',
tooltip='Open a fit dialog',
parent=parent)
@property
@deprecated(replacement='getXRange()[0]', since_version='0.13.0')
def xmin(self):
return self.getXRange()[0]
@property
@deprecated(replacement='getXRange()[1]', since_version='0.13.0')
def xmax(self):
return self.getXRange()[1]
@property
@deprecated(replacement='getXData()', since_version='0.13.0')
def x(self):
return self.getXData()
@property
@deprecated(replacement='getYData()', since_version='0.13.0')
def y(self):
return self.getYData()
@property
@deprecated(since_version='0.13.0')
def xlabel(self):
return self.__curveParams.get('xlabel', None)
@property
@deprecated(since_version='0.13.0')
def ylabel(self):
return self.__curveParams.get('ylabel', None)
@property
@deprecated(since_version='0.13.0')
def legend(self):
return self.__legend
def _createToolWindow(self):
# import done here rather than at module level to avoid circular import
# FitWidget -> BackgroundWidget -> PlotWindow -> actions -> fit -> FitWidget
from ...fit.FitWidget import FitWidget
window = FitWidget(parent=self.plot)
window.setWindowFlags(qt.Qt.Dialog)
window.sigFitWidgetSignal.connect(self.handle_signal)
return window
def _connectPlot(self, window):
if self.isXRangeUpdatedOnZoom():
self.__setAutoXRangeEnabled(True)
else:
plot = self.plot
if plot is None:
_logger.error("No associated PlotWidget")
return
self._setXRange(*plot.getXAxis().getLimits())
if self.isFittedItemUpdatedFromActiveCurve():
self.__setFittedItemAutoUpdateEnabled(True)
else:
# Wait for the next iteration, else the plot is not yet initialized
# No curve available
qt.QTimer.singleShot(10, self._initFit)
def _disconnectPlot(self, window):
if self.isXRangeUpdatedOnZoom():
self.__setAutoXRangeEnabled(False)
if self.isFittedItemUpdatedFromActiveCurve():
self.__setFittedItemAutoUpdateEnabled(False)
def _initFit(self):
plot = self.plot
if plot is None:
_logger.error("No associated PlotWidget")
return
item = _getUniqueCurveOrHistogram(plot)
if item is None:
# ambiguous case, we need to ask which plot item to fit
isd = ItemsSelectionDialog(parent=plot, plot=plot)
isd.setWindowTitle("Select item to be fitted")
isd.setItemsSelectionMode(qt.QTableWidget.SingleSelection)
isd.setAvailableKinds(["curve", "histogram"])
isd.selectAllKinds()
if not isd.exec_(): # Cancel
self._getToolWindow().setVisible(False)
else:
selectedItems = isd.getSelectedItems()
item = selectedItems[0] if len(selectedItems) == 1 else None
self._setXRange(*plot.getXAxis().getLimits())
self._setFittedItem(item)
def __updateFitWidget(self):
"""Update the data/range used by the FitWidget"""
fitWidget = self._getToolWindow()
item = self._getFittedItem()
xdata = self.getXData(copy=False)
ydata = self.getYData(copy=False)
if item is None or xdata is None or ydata is None:
fitWidget.setData(y=None)
fitWidget.setWindowTitle("No curve selected")
else:
xmin, xmax = self.getXRange()
fitWidget.setData(
xdata, ydata, xmin=xmin, xmax=xmax)
fitWidget.setWindowTitle(
"Fitting " + item.getName() +
" on x range %f-%f" % (xmin, xmax))
# X Range management
[docs] def getXRange(self):
"""Returns the range on the X axis on which to perform the fit."""
return self.__range
def _setXRange(self, xmin, xmax):
"""Set the range on which the fit is done.
:param float xmin:
:param float xmax:
"""
range_ = float(xmin), float(xmax)
if self.__range != range_:
self.__range = range_
self.__updateFitWidget()
def __setAutoXRangeEnabled(self, enabled):
"""Implement the change of update mode of the X range.
:param bool enabled:
"""
plot = self.plot
if plot is None:
_logger.error("No associated PlotWidget")
return
if enabled:
self._setXRange(*plot.getXAxis().getLimits())
plot.getXAxis().sigLimitsChanged.connect(self._setXRange)
else:
plot.getXAxis().sigLimitsChanged.disconnect(self._setXRange)
[docs] def setXRangeUpdatedOnZoom(self, enabled):
"""Set whether or not to update the X range on zoom change.
:param bool enabled:
"""
if enabled != self.__rangeAutoUpdate:
self.__rangeAutoUpdate = enabled
if self._getToolWindow().isVisible():
self.__setAutoXRangeEnabled(enabled)
[docs] def isXRangeUpdatedOnZoom(self):
"""Returns the current mode of fitted data X range update.
:rtype: bool
"""
return self.__rangeAutoUpdate
# Fitted item update
[docs] def getXData(self, copy=True):
"""Returns the X data used for the fit or None if undefined.
:param bool copy:
True to get a copy of the data, False to get the internal data.
:rtype: Union[numpy.ndarray,None]
"""
return None if self.__x is None else numpy.array(self.__x, copy=copy)
[docs] def getYData(self, copy=True):
"""Returns the Y data used for the fit or None if undefined.
:param bool copy:
True to get a copy of the data, False to get the internal data.
:rtype: Union[numpy.ndarray,None]
"""
return None if self.__y is None else numpy.array(self.__y, copy=copy)
def _getFittedItem(self):
"""Returns the current item used for the fit
:rtype: Union[~silx.gui.plot.items.Curve,~silx.gui.plot.items.Histogram,None]
"""
return self.__item
def _setFittedItem(self, item):
"""Set the curve to use for fitting.
:param Union[~silx.gui.plot.items.Curve,~silx.gui.plot.items.Histogram,None] item:
"""
plot = self.plot
if plot is None:
_logger.error("No associated PlotWidget")
if plot is None or item is None:
self.__item = None
self.__curveParams = {}
self.__updateFitWidget()
return
axis = item.getYAxis() if isinstance(item, items.YAxisMixIn) else 'left'
self.__curveParams = {
'yaxis': axis,
'xlabel': plot.getXAxis().getLabel(),
'ylabel': plot.getYAxis(axis).getLabel(),
}
self.__legend = item.getName()
if isinstance(item, items.Histogram):
bin_edges = item.getBinEdgesData(copy=False)
# take the middle coordinate between adjacent bin edges
self.__x = (bin_edges[1:] + bin_edges[:-1]) / 2
self.__y = item.getValueData(copy=False)
# else take the active curve, or else the unique curve
elif isinstance(item, items.Curve):
self.__x = item.getXData(copy=False)
self.__y = item.getYData(copy=False)
self.__item = item
self.__updateFitWidget()
def __activeCurveChanged(self, previous, current):
"""Handle change of active curve in the PlotWidget
"""
if current is None:
self._setFittedItem(None)
else:
item = self.plot.getCurve(current)
self._setFittedItem(item)
def __setFittedItemAutoUpdateEnabled(self, enabled):
"""Implement the change of fitted item update mode
:param bool enabled:
"""
plot = self.plot
if plot is None:
_logger.error("No associated PlotWidget")
return
if enabled:
self._setFittedItem(plot.getActiveCurve())
plot.sigActiveCurveChanged.connect(self.__activeCurveChanged)
else:
plot.sigActiveCurveChanged.disconnect(
self.__activeCurveChanged)
[docs] def setFittedItemUpdatedFromActiveCurve(self, enabled):
"""Toggle fitted data synchronization with plot active curve.
:param bool enabled:
"""
enabled = bool(enabled)
if enabled != self.__activeCurveSynchroEnabled:
self.__activeCurveSynchroEnabled = enabled
if self._getToolWindow().isVisible():
self.__setFittedItemAutoUpdateEnabled(enabled)
[docs] def isFittedItemUpdatedFromActiveCurve(self):
"""Returns True if fitted data is synchronized with plot.
:rtype: bool
"""
return self.__activeCurveSynchroEnabled
# Handle fit completed
def handle_signal(self, ddict):
xdata = self.getXData(copy=False)
if xdata is None:
_logger.error("No reference data to display fit result for")
return
xmin, xmax = self.getXRange()
x_fit = xdata[xmin <= xdata]
x_fit = x_fit[x_fit <= xmax]
fit_legend = "Fit <%s>" % self.__legend
fit_curve = self.plot.getCurve(fit_legend)
if ddict["event"] == "FitFinished":
fit_widget = self._getToolWindow()
if fit_widget is None:
return
y_fit = fit_widget.fitmanager.gendata()
if fit_curve is None:
self.plot.addCurve(x_fit, y_fit,
fit_legend,
resetzoom=False,
**self.__curveParams)
else:
fit_curve.setData(x_fit, y_fit)
fit_curve.setVisible(True)
fit_curve.setYAxis(self.__curveParams.get('yaxis', 'left'))
if ddict["event"] in ["FitStarted", "FitFailed"]:
if fit_curve is not None:
fit_curve.setVisible(False)
