Installation steps¶
silx supports Python versions 2.7, 3.4 and 3.5.
To install silx on Windows, read the Windows instructions.
To install silx on Linux, read the Linux instructions.
To install silx on Mac Os X, read the Mac OS X instructions.
You will find the simple instructions for each platform at the beginning of each section, followed by more detailed instructions concerning dependencies and alternative installation methods.
For all platform, to install silx from the source, see Installing from source.
To install silx in a virtualenv, read Installing silx in a virtualenv.
Dependencies¶
The only mandatory dependency of silx is numpy.
Yet, a set of Optional dependencies is necessary to enable all silx features.
Optional dependencies¶
The GUI widgets depend on the following extra packages:
- A Qt binding: either PyQt5, PyQt4 or PySide
- matplotlib
- PyOpenGL
- IPython and qt_console for the silx.gui.console widget.
Tools for reading and writing HDF5 files depend on the following package:
Build dependencies¶
In addition to run-time dependencies, building silx requires a C/C++ compiler, numpy and cython (optional).
On Windows it is recommended to use Python 3.5, because with previous versions of Python, it might be difficult to compile the extensions.
This project uses cython to generate C files. Cython is not mandatory to build silx and is only needed when developing binary modules. If using cython, silx requires at least version 0.18 (with memory-view support).
Linux instructions¶
If NumPy is not installed on your system, you need to install it first either with the package manager of your system (recommended way) or with pip:
pip install numpy --user
On Linux, you can install silx in your home directory:
pip install silx --user
Note
Replace the pip command with pip3 to install silx or any other library for Python 3.
Note
This installs silx without the optional dependencies.
To install silx on Debian 8, see Installing a Debian package. This method requires sudo privileges, but has the benefit of installing dependencies in a simple way.
A CentOS rpm package is provided by Max IV at the following url: http://pubrepo.maxiv.lu.se/rpm/el7/x86_64/
An Arch Linux (AUR) package is also available: https://aur.archlinux.org/packages/python-silx
You can also choose to compile and install silx from it’s sources: see Installing from source.
Installing a Debian package¶
Debian 8 (Jessie) packages are available on http://www.silx.org/pub/debian/ for amd64 computers. To install it, you need to download this file:
http://www.silx.org/pub/debian/silx.list
and copy it into the /etc/apt/source.list.d folder. Then run apt-get update and apt-get install python-silx
wget http://www.silx.org/pub/debian/silx.list
sudo cp silx.list /etc/apt/sources.list.d
sudo apt-get update
sudo apt-get install python-silx python3-silx
Note
The packages are built automatically, hence not signed. You have to accept the installation of non-signed packages.
If the packages are not installed, it might be due to the priority list. You can display the priority list using apt-cache policy python-silx. If the Pin-number of silx.org is too low compared to other sources: download http://www.silx.org/pub/debian/silx.pref into /etc/apt/preferences.d and start the update/install procedure again.
Windows instructions¶
The simple way of installing the silx library on Windows is to type following commands in a command prompt:
pip install silx
Note
This installs silx without the optional dependencies. Instructions on how to install dependencies are given in the Installing dependencies section.
This assumes you have Python and pip installed and configured. If you don’t, read the following sections.
Installing Python¶
Download and install Python from python.org.
We recommend that you install the 64bits version of Python, which is not the default version suggested on the Python website. The 32bits version is limited to 2 GB of memory, and also we don’t provide a silx wheel for it. This means that you would have to install silx from its sources, which requires you to install a C compiler first.
We also encourage you to use Python 3.5 or newer.
Configure Python as explained on docs.python.org to add the python installation directory to your PATH environment variable.
Alternative Scientific Python stacks exists, such as WinPython. They all offer most of the scientific packages already installed which makes the installation of dependencies much easier.
Installing pip¶
Recent version of Python (> 2.7.9 or > 3.4) provide pip by default.
If you have an older version of Python and you do not wish to upgrade it, you can install pip yourself.
Download the script https://bootstrap.pypa.io/get-pip.py and execute it in a command prompt:
python get-pip.py
Using pip¶
Configure your PATH environment variable to include the pip installation directory, the same way as described for Python.
The pip installation directory will likely be C:\Python35\Scripts\.
Then you will be able to use all pip commands listed in following in a command prompt.
Installing dependencies¶
Some of the dependencies may be simply installed with pip:
pip install numpy
pip install matplotlib
pip install PyOpenGL
pip install PyQt5
pip install PySide
Regarding the h5py and PyQt4 modules, you can find the wheels at Christoph Gohlke’s repository:
http://www.lfd.uci.edu/~gohlke/pythonlibs/
Download the appropriate .whl file for your system and install them with pip:
pip install h5py*.whl
pip install PyQt4*.whl
PyQt5 can be downloaded as a binary package for Python 3.5 on the Riverbank Computing website. This package contains everything needed for PyQt5, including Qt.
Mac OS X instructions¶
The easy way to install silx on Mac OS X, is:
pip install silx
This should work without issues, as binary wheels of silx are provided on PyPi.
Wheels are available for h5py on Mac OS X, so you can install it with:
pip install h5py
If at the time of your installation a new version of h5py has been released but the corresponding Mac OS X wheel is not ready, you should install the latest version including a wheel: pip install h5py==2.6.0
A PyQt5 wheel is now available for Python 3.5 on Mac OS X: https://pypi.python.org/simple/pyqt5/. Download it and install it with:
pip install PyQt5-5.6-cp35-cp35m-macosx_10_6_intel.whl
This should work for all versions of Mac OS X from 10.6.
Installing from source¶
Building silx from the source requires some Build dependencies.
Building from source¶
Source package of silx releases can be downloaded from the pypi project page.
After downloading the silx-x.y.z.tar.gz archive, extract its content:
tar xzvf silx-x.y.z.tar.gz
Alternatively, you can get the latest source code from the master branch of the git repository: https://github.com/silx-kit/silx/archive/master.zip
You can now build and install silx from its sources:
cd silx-x.y.z
pip uninstall -y silx
pip install . [--user]
Known issues¶
There are specific issues related to MacOSX. If you get this error:
UnicodeDecodeError: 'ascii' codec can't decode byte 0xc3 in position 1335: ordinal not in range(128)
This is related to the two environment variable LC_ALL and LANG not defined (or wrongly defined to UTF-8). To set the environment variable, type on the command line:
export LC_ALL=en_US.UTF-8
export LANG=en_US.UTF-8
Advanced build options¶
In case you want more control over the build procedure, the build command is:
python setup.py build
After this build, you will still need to install silx to be able to use it:
python setup.py install [--user]
There are few advanced options to setup.py build:
- --no-cython: Prevent Cython (even if installed) to re-generate the C source code. Use the one provided by the development team.
- --no-openmp: Recompiles the Cython code without OpenMP support (default for MacOSX).
- --openmp: Recompiles the Cython code with OpenMP support (default for Windows and Linux).
To build the documentation (this requires Sphinx), run:
python setup.py build build_doc
Testing¶
To run the tests of an installed version of silx, from the python interpreter, run:
>>> import silx.test
>>> silx.test.run_tests()
Table Of Contents
- Installation steps