Source code for silx.gui.plot.actions.medfilt

# coding: utf-8
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"""
:mod:`silx.gui.plot.actions.medfilt` provides a set of QAction to apply filter
on data contained in a :class:`.PlotWidget`.

The following QAction are available:

- :class:`MedianFilterAction`
- :class:`MedianFilter1DAction`
- :class:`MedianFilter2DAction`

"""

from __future__ import division

__authors__ = ["V.A. Sole", "T. Vincent", "P. Knobel"]
__license__ = "MIT"

__date__ = "10/10/2018"

from .PlotToolAction import PlotToolAction
from silx.gui.widgets.MedianFilterDialog import MedianFilterDialog
from silx.math.medianfilter import medfilt2d
import logging

_logger = logging.getLogger(__name__)


class MedianFilterAction(PlotToolAction):
    """QAction to plot the pixels intensities diagram

    :param plot: :class:`.PlotWidget` instance on which to operate
    :param parent: See :class:`QAction`
    """

    def __init__(self, plot, parent=None):
        PlotToolAction.__init__(self,
                                plot,
                                icon='median-filter',
                                text='median filter',
                                tooltip='Apply a median filter on the image',
                                parent=parent)
        self._originalImage = None
        self._legend = None
        self._filteredImage = None

    def _createToolWindow(self):
        popup = MedianFilterDialog(parent=self.plot)
        popup.sigFilterOptChanged.connect(self._updateFilter)
        return popup

    def _connectPlot(self, window):
        PlotToolAction._connectPlot(self, window)
        self.plot.sigActiveImageChanged.connect(self._updateActiveImage)
        self._updateActiveImage()

    def _disconnectPlot(self, window):
        PlotToolAction._disconnectPlot(self, window)
        self.plot.sigActiveImageChanged.disconnect(self._updateActiveImage)

    def _updateActiveImage(self):
        """Set _activeImageLegend and _originalImage from the active image"""
        self._activeImageLegend = self.plot.getActiveImage(just_legend=True)
        if self._activeImageLegend is None:
            self._originalImage = None
            self._legend = None
        else:
            self._originalImage = self.plot.getImage(self._activeImageLegend).getData(copy=False)
            self._legend = self.plot.getImage(self._activeImageLegend).getLegend()

    def _updateFilter(self, kernelWidth, conditional=False):
        if self._originalImage is None:
            return

        self.plot.sigActiveImageChanged.disconnect(self._updateActiveImage)
        filteredImage = self._computeFilteredImage(kernelWidth, conditional)
        self.plot.addImage(data=filteredImage,
                           legend=self._legend,
                           replace=True)
        self.plot.sigActiveImageChanged.connect(self._updateActiveImage)

    def _computeFilteredImage(self, kernelWidth, conditional):
        raise NotImplementedError('MedianFilterAction is a an abstract class')

    def getFilteredImage(self):
        """
        :return: the image with the median filter apply on"""
        return self._filteredImage


class MedianFilter1DAction(MedianFilterAction):
    """Define the MedianFilterAction for 1D

    :param plot: :class:`.PlotWidget` instance on which to operate
    :param parent: See :class:`QAction`
    """
    def __init__(self, plot, parent=None):
        MedianFilterAction.__init__(self,
                                    plot,
                                    parent=parent)

    def _computeFilteredImage(self, kernelWidth, conditional):
        assert(self.plot is not None)
        return medfilt2d(self._originalImage,
                         (kernelWidth, 1),
                         conditional)


class MedianFilter2DAction(MedianFilterAction):
    """Define the MedianFilterAction for 2D

    :param plot: :class:`.PlotWidget` instance on which to operate
    :param parent: See :class:`QAction`
    """
    def __init__(self, plot, parent=None):
        MedianFilterAction.__init__(self,
                                    plot,
                                    parent=parent)

    def _computeFilteredImage(self, kernelWidth, conditional):
        assert(self.plot is not None)
        return medfilt2d(self._originalImage,
                         (kernelWidth, kernelWidth),
                         conditional)