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"""This module defines a widget designed to display data using the most adapted
view from the ones provided by silx.
"""
import logging
import os.path
import collections
from silx.gui import qt
from silx.gui.data import DataViews
from silx.gui.data.DataViews import _normalizeData
from silx.gui.utils import blockSignals
from silx.gui.data.NumpyAxesSelector import NumpyAxesSelector
__authors__ = ["V. Valls"]
__license__ = "MIT"
__date__ = "12/02/2019"
_logger = logging.getLogger(__name__)
DataSelection = collections.namedtuple("DataSelection",
["filename", "datapath",
"slice", "permutation"])
[docs]class DataViewer(qt.QFrame):
"""Widget to display any kind of data
.. image:: img/DataViewer.png
The method :meth:`setData` allows to set any data to the widget. Mostly
`numpy.array` and `h5py.Dataset` are supported with adapted views. Other
data types are displayed using a text viewer.
A default view is automatically selected when a data is set. The method
:meth:`setDisplayMode` allows to change the view. To have a graphical tool
to select the view, prefer using the widget :class:`DataViewerFrame`.
The dimension of the input data and the expected dimension of the selected
view can differ. For example you can display an image (2D) from 4D
data. In this case a :class:`NumpyAxesSelector` is displayed to allow the
user to select the axis mapping and the slicing of other axes.
.. code-block:: python
import numpy
data = numpy.random.rand(500,500)
viewer = DataViewer()
viewer.setData(data)
viewer.setVisible(True)
"""
displayedViewChanged = qt.Signal(object)
"""Emitted when the displayed view changes"""
dataChanged = qt.Signal()
"""Emitted when the data changes"""
selectionChanged = qt.Signal(object, object)
"""Emitted when the data selection changes.
It provides:
- the slicing as a tuple of slice or None.
- the permutation as a tuple of int or None.
"""
currentAvailableViewsChanged = qt.Signal()
"""Emitted when the current available views (which support the current
data) change"""
def __init__(self, parent=None):
"""Constructor
:param QWidget parent: The parent of the widget
"""
super(DataViewer, self).__init__(parent)
self.__stack = qt.QStackedWidget(self)
self.__numpySelection = NumpyAxesSelector(self)
self.__numpySelection.selectedAxisChanged.connect(self.__numpyAxisChanged)
self.__numpySelection.selectionChanged.connect(self.__numpySelectionChanged)
self.__numpySelection.customAxisChanged.connect(self.__numpyCustomAxisChanged)
self.setLayout(qt.QVBoxLayout(self))
self.layout().addWidget(self.__stack, 1)
group = qt.QGroupBox(self)
group.setLayout(qt.QVBoxLayout())
group.layout().addWidget(self.__numpySelection)
group.setTitle("Axis selection")
self.__axisSelection = group
self.layout().addWidget(self.__axisSelection)
self.__currentAvailableViews = []
self.__currentView = None
self.__data = None
self.__info = None
self.__useAxisSelection = False
self.__userSelectedView = None
self.__hooks = None
self.__previousSelection = DataSelection(None, None, None, None)
self.__views = []
self.__index = {}
"""store stack index for each views"""
self._initializeViews()
def _initializeViews(self):
"""Inisialize the available views"""
views = self.createDefaultViews(self.__stack)
self.__views = list(views)
self.setDisplayMode(DataViews.EMPTY_MODE)
[docs] def setGlobalHooks(self, hooks):
"""Set a data view hooks for all the views
:param DataViewHooks context: The hooks to use
"""
self.__hooks = hooks
for v in self.__views:
v.setHooks(hooks)
[docs] def createDefaultViews(self, parent=None):
"""Create and returns available views which can be displayed by default
by the data viewer. It is called internally by the widget. It can be
overwriten to provide a different set of viewers.
:param QWidget parent: QWidget parent of the views
:rtype: List[silx.gui.data.DataViews.DataView]
"""
viewClasses = [
DataViews._EmptyView,
DataViews._Hdf5View,
DataViews._NXdataView,
DataViews._Plot1dView,
DataViews._ImageView,
DataViews._Plot3dView,
DataViews._RawView,
DataViews._StackView,
DataViews._Plot2dRecordView,
]
views = []
for viewClass in viewClasses:
try:
view = viewClass(parent)
views.append(view)
except Exception:
_logger.warning("%s instantiation failed. View is ignored" % viewClass.__name__)
_logger.debug("Backtrace", exc_info=True)
return views
[docs] def clear(self):
"""Clear the widget"""
self.setData(None)
[docs] def normalizeData(self, data):
"""Returns a normalized data if the embed a numpy or a dataset.
Else returns the data."""
return _normalizeData(data)
def __getStackIndex(self, view):
"""Get the stack index containing the view.
:param silx.gui.data.DataViews.DataView view: The view
"""
if view not in self.__index:
widget = view.getWidget()
index = self.__stack.addWidget(widget)
self.__index[view] = index
else:
index = self.__index[view]
return index
def __clearCurrentView(self):
"""Clear the current selected view"""
view = self.__currentView
if view is not None:
view.clear()
def __numpyCustomAxisChanged(self, name, value):
view = self.__currentView
if view is not None:
view.setCustomAxisValue(name, value)
def __updateNumpySelectionAxis(self):
"""
Update the numpy-selector according to the needed axis names
"""
with blockSignals(self.__numpySelection):
previousPermutation = self.__numpySelection.permutation()
previousSelection = self.__numpySelection.selection()
self.__numpySelection.clear()
info = self._getInfo()
axisNames = self.__currentView.axesNames(self.__data, info)
if (info.isArray and info.size != 0 and
self.__data is not None and axisNames is not None):
self.__useAxisSelection = True
self.__numpySelection.setAxisNames(axisNames)
self.__numpySelection.setCustomAxis(
self.__currentView.customAxisNames())
data = self.normalizeData(self.__data)
self.__numpySelection.setData(data)
# Try to restore previous permutation and selection
try:
self.__numpySelection.setSelection(
previousSelection, previousPermutation)
except ValueError as e:
_logger.info("Not restoring selection because: %s", e)
if hasattr(data, "shape"):
isVisible = not (len(axisNames) == 1 and len(data.shape) == 1)
else:
isVisible = True
self.__axisSelection.setVisible(isVisible)
else:
self.__useAxisSelection = False
self.__axisSelection.setVisible(False)
def __updateDataInView(self):
"""
Update the views using the current data
"""
if self.__useAxisSelection:
self.__displayedData = self.__numpySelection.selectedData()
permutation = self.__numpySelection.permutation()
normal = tuple(range(len(permutation)))
if permutation == normal:
permutation = None
slicing = self.__numpySelection.selection()
normal = tuple([slice(None)] * len(slicing))
if slicing == normal:
slicing = None
else:
self.__displayedData = self.__data
permutation = None
slicing = None
try:
filename = os.path.abspath(self.__data.file.filename)
except:
filename = None
try:
datapath = self.__data.name
except:
datapath = None
#Â FIXME: maybe use DataUrl, with added support of permutation
self.__displayedSelection = DataSelection(filename, datapath, slicing, permutation)
# TODO: would be good to avoid that, it should be synchonous
qt.QTimer.singleShot(10, self.__setDataInView)
def __setDataInView(self):
self.__currentView.setData(self.__displayedData)
self.__currentView.setDataSelection(self.__displayedSelection)
# Emit signal only when selection has changed
if (self.__previousSelection.slice != self.__displayedSelection.slice or
self.__previousSelection.permutation != self.__displayedSelection.permutation
):
self.selectionChanged.emit(
self.__displayedSelection.slice, self.__displayedSelection.permutation)
self.__previousSelection = self.__displayedSelection
[docs] def setDisplayedView(self, view):
"""Set the displayed view.
Change the displayed view according to the view itself.
:param silx.gui.data.DataViews.DataView view: The DataView to use to display the data
"""
self.__userSelectedView = view
self._setDisplayedView(view)
def _setDisplayedView(self, view):
"""Internal set of the displayed view.
Change the displayed view according to the view itself.
:param silx.gui.data.DataViews.DataView view: The DataView to use to display the data
"""
if self.__currentView is view:
return
self.__clearCurrentView()
self.__currentView = view
self.__updateNumpySelectionAxis()
self.__updateDataInView()
stackIndex = self.__getStackIndex(self.__currentView)
if self.__currentView is not None:
self.__currentView.select()
self.__stack.setCurrentIndex(stackIndex)
self.displayedViewChanged.emit(view)
[docs] def getViewFromModeId(self, modeId):
"""Returns the first available view which have the requested modeId.
Return None if modeId does not correspond to an existing view.
:param int modeId: Requested mode id
:rtype: silx.gui.data.DataViews.DataView
"""
for view in self.__views:
if view.modeId() == modeId:
return view
return None
[docs] def setDisplayMode(self, modeId):
"""Set the displayed view using display mode.
Change the displayed view according to the requested mode.
:param int modeId: Display mode, one of
- `DataViews.EMPTY_MODE`: display nothing
- `DataViews.PLOT1D_MODE`: display the data as a curve
- `DataViews.IMAGE_MODE`: display the data as an image
- `DataViews.PLOT3D_MODE`: display the data as an isosurface
- `DataViews.RAW_MODE`: display the data as a table
- `DataViews.STACK_MODE`: display the data as a stack of images
- `DataViews.HDF5_MODE`: display the data as a table of HDF5 info
- `DataViews.NXDATA_MODE`: display the data as NXdata
"""
try:
view = self.getViewFromModeId(modeId)
except KeyError:
raise ValueError("Display mode %s is unknown" % modeId)
self._setDisplayedView(view)
[docs] def displayedView(self):
"""Returns the current displayed view.
:rtype: silx.gui.data.DataViews.DataView
"""
return self.__currentView
[docs] def addView(self, view):
"""Allow to add a view to the dataview.
If the current data support this view, it will be displayed.
:param DataView view: A dataview
"""
if self.__hooks is not None:
view.setHooks(self.__hooks)
self.__views.append(view)
# TODO It can be skipped if the view do not support the data
self.__updateAvailableViews()
[docs] def removeView(self, view):
"""Allow to remove a view which was available from the dataview.
If the view was displayed, the widget will be updated.
:param DataView view: A dataview
"""
self.__views.remove(view)
self.__stack.removeWidget(view.getWidget())
# invalidate the full index. It will be updated as expected
self.__index = {}
if self.__userSelectedView is view:
self.__userSelectedView = None
if view is self.__currentView:
self.__updateView()
else:
# TODO It can be skipped if the view is not part of the
# available views
self.__updateAvailableViews()
def __updateAvailableViews(self):
"""
Update available views from the current data.
"""
data = self.__data
info = self._getInfo()
# sort available views according to priority
views = []
for v in self.__views:
views.extend(v.getMatchingViews(data, info))
views = [(v.getCachedDataPriority(data, info), v) for v in views]
views = filter(lambda t: t[0] > DataViews.DataView.UNSUPPORTED, views)
views = sorted(views, reverse=True)
views = [v[1] for v in views]
# store available views
self.__setCurrentAvailableViews(views)
def __updateView(self):
"""Display the data using the widget which fit the best"""
data = self.__data
# update available views for this data
self.__updateAvailableViews()
available = self.__currentAvailableViews
# display the view with the most priority (the default view)
view = self.getDefaultViewFromAvailableViews(data, available)
self.__clearCurrentView()
try:
self._setDisplayedView(view)
except Exception as e:
# in case there is a problem to read the data, try to use a safe
# view
view = self.getSafeViewFromAvailableViews(data, available)
self._setDisplayedView(view)
raise e
[docs] def getSafeViewFromAvailableViews(self, data, available):
"""Returns a view which is sure to display something without failing
on rendering.
:param object data: data which will be displayed
:param List[view] available: List of available views, from highest
priority to lowest.
:rtype: DataView
"""
hdf5View = self.getViewFromModeId(DataViews.HDF5_MODE)
if hdf5View in available:
return hdf5View
return self.getViewFromModeId(DataViews.EMPTY_MODE)
[docs] def getDefaultViewFromAvailableViews(self, data, available):
"""Returns the default view which will be used according to available
views.
:param object data: data which will be displayed
:param List[view] available: List of available views, from highest
priority to lowest.
:rtype: DataView
"""
if len(available) > 0:
# returns the view with the highest priority
if self.__userSelectedView in available:
return self.__userSelectedView
self.__userSelectedView = None
view = available[0]
else:
# else returns the empty view
view = self.getViewFromModeId(DataViews.EMPTY_MODE)
return view
def __setCurrentAvailableViews(self, availableViews):
"""Set the current available viewa
:param List[DataView] availableViews: Current available viewa
"""
self.__currentAvailableViews = availableViews
self.currentAvailableViewsChanged.emit()
[docs] def currentAvailableViews(self):
"""Returns the list of available views for the current data
:rtype: List[DataView]
"""
return self.__currentAvailableViews
[docs] def getReachableViews(self):
"""Returns the list of reachable views from the registred available
views.
:rtype: List[DataView]
"""
views = []
for v in self.availableViews():
views.extend(v.getReachableViews())
return views
[docs] def availableViews(self):
"""Returns the list of registered views
:rtype: List[DataView]
"""
return self.__views
[docs] def setData(self, data):
"""Set the data to view.
It mostly can be a h5py.Dataset or a numpy.ndarray. Other kind of
objects will be displayed as text rendering.
:param numpy.ndarray data: The data.
"""
self.__data = data
self._invalidateInfo()
self.__displayedData = None
self.__displayedSelection = None
self.__updateView()
self.__updateNumpySelectionAxis()
self.__updateDataInView()
self.dataChanged.emit()
def __numpyAxisChanged(self):
"""
Called when axis selection of the numpy-selector changed
"""
self.__clearCurrentView()
def __numpySelectionChanged(self):
"""
Called when data selection of the numpy-selector changed
"""
self.__updateDataInView()
[docs] def data(self):
"""Returns the data"""
return self.__data
def _invalidateInfo(self):
"""Invalidate DataInfo cache."""
self.__info = None
def _getInfo(self):
"""Returns the DataInfo of the current selected data.
This value is cached.
:rtype: DataInfo
"""
if self.__info is None:
self.__info = DataViews.DataInfo(self.__data)
return self.__info
[docs] def displayMode(self):
"""Returns the current display mode"""
return self.__currentView.modeId()
[docs] def replaceView(self, modeId, newView):
"""Replace one of the builtin data views with a custom view.
Return True in case of success, False in case of failure.
.. note::
This method must be called just after instantiation, before
the viewer is used.
:param int modeId: Unique mode ID identifying the DataView to
be replaced. One of:
- `DataViews.EMPTY_MODE`
- `DataViews.PLOT1D_MODE`
- `DataViews.IMAGE_MODE`
- `DataViews.PLOT2D_MODE`
- `DataViews.COMPLEX_IMAGE_MODE`
- `DataViews.PLOT3D_MODE`
- `DataViews.RAW_MODE`
- `DataViews.STACK_MODE`
- `DataViews.HDF5_MODE`
- `DataViews.NXDATA_MODE`
- `DataViews.NXDATA_INVALID_MODE`
- `DataViews.NXDATA_SCALAR_MODE`
- `DataViews.NXDATA_CURVE_MODE`
- `DataViews.NXDATA_XYVSCATTER_MODE`
- `DataViews.NXDATA_IMAGE_MODE`
- `DataViews.NXDATA_STACK_MODE`
:param DataViews.DataView newView: New data view
:return: True if replacement was successful, else False
"""
assert isinstance(newView, DataViews.DataView)
isReplaced = False
for idx, view in enumerate(self.__views):
if view.modeId() == modeId:
if self.__hooks is not None:
newView.setHooks(self.__hooks)
self.__views[idx] = newView
isReplaced = True
break
elif isinstance(view, DataViews.CompositeDataView):
isReplaced = view.replaceView(modeId, newView)
if isReplaced:
break
if isReplaced:
self.__updateAvailableViews()
return isReplaced
