Index

A

actor_generic_method() (in module integrator.distributed_integration) actor_get_attribute() (in module integrator.distributed_integration) actor_process_stack() (in module integrator.distributed_integration)

AeroystepScan (class in integrator.scantypes_id15a) ai_method (integrator.integrator.AIConfiguration attribute) AIConfiguration (class in integrator.integrator) azimuthal_range (integrator.integrator.AIConfiguration attribute)

B

bootstrap() (in module integrator.app.bootstrap)

browse_datasets_wildcard() (in module integrator.app.utils) browse_virtual_sources() (in module integrator.utils)

C

cancel() (integrator.utils.PeriodicAction method) check_datasets_cli() (in module integrator.app.check_datasets) check_integrated_datasets() (in module integrator.app.check_datasets) check_nxtomomill_plugins_dir() (in module integrator.app.convertnx) check_nxtomomill_version() (in module integrator.app.convertnx) check_poni_file_detector() (in module integrator.utils) check_writeable_output() (in module integrator.app.validators) close_processes() (integrator.multiproc_integration.MultiprocIntegrator method) ClusterConfiguration (class in integrator.base) config_to_aiconfig() (in module integrator.app.utils) config_to_clusterconfig() (in module integrator.app.utils) convert_bliss_hdf5_to_nx() (in module integrator.nxtomomill_utils) (in module integrator.watcherv0)

convert_cli() (in module integrator.app.convertnx) convert_h5_to_nx() (in module integrator.app.convertnx) convert_to_tuple_of_floats() (in module integrator.app.validators) cores (integrator.base.ClusterConfiguration attribute) correct_solid_angle (integrator.integrator.AIConfiguration attribute) create_azimuthal_integrator() (in module integrator.integrator) create_integrator_conf_file() (in module integrator.watcherv0) create_legacy_output_file() (in module integrator.utils) (integrator.integrator.StackIntegrator method) create_output_files() (integrator.distributed_integration.DistributedStackIntegrator method) create_output_masterfile() (in module integrator.utils) (integrator.integrator.StackIntegrator method)

D

dark_file (integrator.integrator.AIConfiguration attribute) default_detector_name (integrator.scantypes_id15a.ScanType attribute) detector (integrator.integrator.AIConfiguration attribute) device_type (integrator.multiproc_integration.MultiprocIntegrator attribute)

distribute_integration_tasks() (integrator.distributed_integration.DistributedStackIntegrator method) (integrator.multiproc_integration.MultiprocIntegrator method) DistributedIntegrator (class in integrator.base) DistributedStackIntegrator (class in integrator.distributed_integration)

E

error_model (integrator.integrator.AIConfiguration attribute) exec_shell_command() (in module integrator.app.convertnx) (in module integrator.utils)

exposure_time (integrator.hdf5.HDF5Dataset property)

F

files_relative_paths() (in module integrator.utils) flatfield_file (integrator.integrator.AIConfiguration attribute) frame_print() (in module integrator.app.check_datasets)

FScan (class in integrator.scantypes_id15a) FScan2D (class in integrator.scantypes_id15a) FtimeScan (in module integrator.scantypes_id15a)

G

generate_bash_script() (in module integrator.app.integrate_mp) get_actors() (in module integrator.distributed_integration) get_all_stacks_sizes() (integrator.hdf5.ID15Dataset method) get_data_sources() (in module integrator.hdf5) get_datasets_list() (in module integrator.app.utils) get_distributed_integrator_params() (in module integrator.app.utils) get_eta() (integrator.distributed_integration.DistributedStackIntegrator method) get_folders_id15a_layout() (in module integrator.app.utils) get_h5_config_from_pyfai() (in module integrator.utils) get_h5_value() (in module integrator.scantypes_id15a) get_h5obj_value() (in module integrator.hdf5) get_metadata() (integrator.scantypes_id15a.ScanType method) get_motors() (integrator.scantypes_id15a.FScan method) (integrator.scantypes_id15a.FScan2D method) (integrator.scantypes_id15a.ScanType method)

get_number_of_available_gpus() (in module integrator.utils) get_nxtomomill_plugins() (in module integrator.app.convertnx) get_nxtomomill_plugins_dir() (in module integrator.app.convertnx) get_opencl_devices() (in module integrator.utils) get_output_nx_filepath() (integrator.watcher.HDF5AcquisitionEventHandler method) get_pyfai_configuration() (integrator.integrator.StackIntegrator method) get_scan_metadata() (in module integrator.scantypes_id15a) get_stack_size() (integrator.hdf5.ID15Dataset method) get_string() (in module integrator.hdf5) get_title() (in module integrator.scantypes_id15a) get_virtual_sources() (integrator.hdf5.ID15Dataset method) get_worker_threads_affinity() (in module integrator.utils) get_workers() (integrator.distributed_integration.DistributedStackIntegrator method) get_writer_configuration() (integrator.integrator.StackIntegrator method) guess_detector_name() (in module integrator.hdf5)

H

HDF5AcquisitionEventHandler (class in integrator.watcher) (class in integrator.watcherv0)

HDF5AcquisitionEventHandlerv0 (class in integrator.watcherv0) HDF5Dataset (class in integrator.hdf5)

I

ID11Dataset (class in integrator.hdf5) ID15Dataset (class in integrator.hdf5) initialize_ai_engine() (integrator.integrator.StackIntegrator method) integrate_dataset() (integrator.distributed_integration.DistributedStackIntegrator method) integrate_image() (integrator.integrator.StackIntegrator method) integrate_mp_cli() (in module integrator.app.integrate_mp) integrate_mp_worker_cli() (in module integrator.app.integrate_mp_worker) integrate_slurm_cli() (in module integrator.app.integrate_slurm) integrator module integrator.app module integrator.app.bootstrap module integrator.app.check_datasets module integrator.app.convertnx module integrator.app.integrate_mp module integrator.app.integrate_mp_worker module integrator.app.integrate_slurm module integrator.app.integrator_config module integrator.app.pack module

integrator.app.spawn module integrator.app.utils module integrator.app.validators module integrator.app.watcher module integrator.base module integrator.distributed_integration module integrator.hdf5 module integrator.integrator module integrator.multiproc_integration module integrator.nxtomomill_utils module integrator.scantypes_id15a module integrator.utils module integrator.watcher module integrator.watcherv0 module is_dataset_entry() (in module integrator.hdf5)

J

job_extra (integrator.base.ClusterConfiguration attribute)

L

LimaTake (class in integrator.scantypes_id15a) list_datasets() (in module integrator.hdf5)

list_datasets_with_attributes() (in module integrator.hdf5) LocalDistributedStackIntegrator (class in integrator.distributed_integration) LoopScan (class in integrator.scantypes_id15a)

M

make_azims() (in module integrator.utils) mask_file (integrator.integrator.AIConfiguration attribute) memory (integrator.base.ClusterConfiguration attribute) module integrator integrator.app integrator.app.bootstrap integrator.app.check_datasets integrator.app.convertnx integrator.app.integrate_mp integrator.app.integrate_mp_worker integrator.app.integrate_slurm integrator.app.integrator_config integrator.app.pack integrator.app.spawn integrator.app.utils integrator.app.validators integrator.app.watcher integrator.base integrator.distributed_integration integrator.hdf5 integrator.integrator integrator.multiproc_integration integrator.nxtomomill_utils integrator.scantypes_id15a integrator.utils integrator.watcher integrator.watcherv0

mp_integrate_datasets() (in module integrator.multiproc_integration) MultiprocIntegrator (class in integrator.multiproc_integration)

N

n_pts (integrator.integrator.AIConfiguration attribute)

O

on_created() (integrator.watcher.HDF5AcquisitionEventHandler method) (integrator.watcherv0.HDF5AcquisitionEventHandler method) (integrator.watcherv0.HDF5AcquisitionEventHandlerv0 method) on_deleted() (integrator.watcherv0.HDF5AcquisitionEventHandlerv0 method) on_modified() (integrator.watcher.HDF5AcquisitionEventHandler method) (integrator.watcherv0.HDF5AcquisitionEventHandlerv0 method) on_moved() (integrator.watcher.HDF5AcquisitionEventHandler method) (integrator.watcherv0.HDF5AcquisitionEventHandlerv0 method)

optional_fields (integrator.scantypes_id15a.AeroystepScan attribute) (integrator.scantypes_id15a.FScan attribute) (integrator.scantypes_id15a.FScan2D attribute) (integrator.scantypes_id15a.LimaTake attribute) (integrator.scantypes_id15a.LoopScan attribute) (integrator.scantypes_id15a.ScanType attribute)

P

pack_cli() (in module integrator.app.pack) parse_poni_file() (in module integrator.utils) parse_sections() (in module integrator.app.bootstrap) partition_list() (in module integrator.utils) PatchLogLevel (class in integrator.utils) PeriodicAction (class in integrator.utils) polarization_factor (integrator.integrator.AIConfiguration attribute)

poni_file (integrator.integrator.AIConfiguration attribute) print_watched_path() (integrator.watcher.HDF5AcquisitionEventHandler method) process_full_dataset() (integrator.integrator.StackIntegrator method) process_stack() (integrator.integrator.StackIntegrator method) processes (integrator.base.ClusterConfiguration attribute) project (integrator.base.ClusterConfiguration attribute) python (integrator.base.ClusterConfiguration attribute)

Q

queue (integrator.base.ClusterConfiguration attribute)

R

radial_range (integrator.integrator.AIConfiguration attribute) repack_output() (in module integrator.hdf5) (integrator.integrator.StackIntegrator method) required_fields (integrator.scantypes_id15a.AeroystepScan attribute) (integrator.scantypes_id15a.FScan attribute) (integrator.scantypes_id15a.FScan2D attribute) (integrator.scantypes_id15a.LimaTake attribute) (integrator.scantypes_id15a.LoopScan attribute) (integrator.scantypes_id15a.ScanType attribute)

result (integrator.integrator.StackIntegrator property) retry_create_masterfile() (in module integrator.utils)

S

Scan() (in module integrator.scantypes_id15a) ScanMonitorIntegrator (class in integrator.watcherv0) ScanType (class in integrator.scantypes_id15a) scheduler_options (integrator.base.ClusterConfiguration attribute) set_new_dataset() (integrator.base.DistributedIntegrator method) (integrator.distributed_integration.DistributedStackIntegrator method) (integrator.integrator.StackIntegrator method) (integrator.multiproc_integration.MultiprocIntegrator method)

set_stacksize() (integrator.integrator.StackIntegrator method) set_workers_name_prefix() (integrator.multiproc_integration.MultiprocIntegrator method) spawn_cluster_cli() (in module integrator.app.spawn) StackIntegrator (class in integrator.integrator) start() (integrator.utils.PeriodicAction method) start_acq_watcher() (integrator.watcherv0.ScanMonitorIntegrator method) stop() (integrator.utils.PeriodicAction method) stop_acq_watcher() (integrator.watcherv0.ScanMonitorIntegrator method)

T

trim_bounds (integrator.integrator.AIConfiguration attribute)

trim_method (integrator.integrator.AIConfiguration attribute) trim_n_pts (integrator.integrator.AIConfiguration attribute)

U

unit (integrator.integrator.AIConfiguration attribute)

W

wait_until_h5_is_valid() (in module integrator.watcher) (in module integrator.watcherv0) walltime (integrator.base.ClusterConfiguration attribute) walltime_to_seconds() (in module integrator.utils)

watcher_cli() (in module integrator.app.watcher) worker_scan() (in module integrator.multiproc_integration) workers (integrator.base.ClusterConfiguration attribute) workers_are_alive() (integrator.distributed_integration.DistributedStackIntegrator method)