nabu.app package

Submodules

• nabu.app.bootstrap module
  • bootstrap()
  • get_config_template()
• nabu.app.bootstrap_stitching module
  • guess_tomo_objects()
  • bootstrap_stitching()
• nabu.app.cast_volume module
  • main()
• nabu.app.cli_configs module
• nabu.app.compare_volumes module
  • idx_1d_to_3d()
  • compare_volumes()
  • compare_volumes_cli()
• nabu.app.composite_cor module
  • NumpyArrayEncoder
    • NumpyArrayEncoder.default()
  • main()
  • composite_cor_entry_point()
• nabu.app.correct_rot module
  • main()
• nabu.app.create_distortion_map_from_poly module
  • create_distortion_maps_entry_point()
  • create_maps_x_and_z()
• nabu.app.diag_to_pix module
  • transform_images()
  • detailed_merit()
  • merit()
  • build_total_merit_list()
  • main()
• nabu.app.diag_to_rot module
  • transform_images()
  • total_merit_list()
  • find_best_interpolating_line()
  • main()
  • do_height_by_height()
  • do_linear_interpolation()
• nabu.app.double_flatfield module
  • DoubleFlatFieldChunks
    • DoubleFlatFieldChunks.compute_double_flatfield()
    • DoubleFlatFieldChunks.write_double_flatfield()
  • dff_cli()
• nabu.app.generate_header module
  • decode_bytes()
  • simulate_edf_header()
  • simulate_info_file()
  • get_hst_saturations()
  • simulate_hst_vol_header()
  • format_as_info()
  • generate_merged_info_file_content()
  • str_or_none()
  • generate_merged_info_file()
• nabu.app.histogram module
  • VolumesHistogram
    • VolumesHistogram.available_backends
    • VolumesHistogram.get_histogram_single_volume()
    • VolumesHistogram.get_histogram()
    • VolumesHistogram.merge_histograms_configurations()
    • VolumesHistogram.write_histogram()
  • histogram_cli()
• nabu.app.multicor module
  • get_user_cors()
  • main()
• nabu.app.nx_z_splitter module
  • NXZSplitter
    • NXZSplitter.z_split()
  • zsplit()
• nabu.app.parse_reconstruction_log module
  • extract_timings_from_volume_reconstruction_lines()
  • parse_logfile()
  • display_timings_pie()
  • parse_reclog_cli()
• nabu.app.prepare_weights_double module
  • main()
  • create_heli_maps()
• nabu.app.reconstruct module
  • update_reconstruction_start_end()
  • get_log_file()
  • get_reconstructor()
  • main()
• nabu.app.reconstruct_helical module
  • main_helical()
• nabu.app.reduce_dark_flat module
  • reduce_dark_flat()
  • main()
• nabu.app.rotate module
  • HDF5ImagesStackRotation
    • HDF5ImagesStackRotation.rotate_images()
  • rotate_cli()
• nabu.app.shrink_dataset module
  • access_nested_dict()
  • set_nested_dict_value()
  • shrink_dataset()
  • shrink_cli()
• nabu.app.stitching module
  • main()
• nabu.app.utils module
  • parse_params_values()
  • parse_sections()
• nabu.app.validator module
  • get_scans()
  • main()

Module contents