nabu.pipeline package

Subpackages

• nabu.pipeline.fullfield package
  • Submodules
    • nabu.pipeline.fullfield.chunked module
      • ChunkedPipeline
    • nabu.pipeline.fullfield.chunked_cuda module
      • CudaChunkedPipeline
    • nabu.pipeline.fullfield.computations module
      • estimate_required_memory()
      • estimate_max_chunk_size()
    • nabu.pipeline.fullfield.dataset_validator module
      • FullFieldDatasetValidator
    • nabu.pipeline.fullfield.nabu_config module
    • nabu.pipeline.fullfield.processconfig module
      • ProcessConfig
    • nabu.pipeline.fullfield.reconstruction module
      • variable_idxlen_sort()
      • FullFieldReconstructor
  • Module contents
• nabu.pipeline.helical package
  • Submodules
    • nabu.pipeline.helical.dataset_validator module
      • HelicalDatasetValidator
    • nabu.pipeline.helical.fbp module
      • BackprojectorHelical
    • nabu.pipeline.helical.filtering module
      • HelicalSinoFilter
    • nabu.pipeline.helical.gridded_accumulator module
      • GriddedAccumulator
      • overlap_logic()
      • padding_logic()
      • get_reconstruction_space()
    • nabu.pipeline.helical.helical_chunked_regridded module
    • nabu.pipeline.helical.helical_chunked_regridded_cuda module
    • nabu.pipeline.helical.helical_reconstruction module
    • nabu.pipeline.helical.helical_utils module
      • find_mirror_indexes()
    • nabu.pipeline.helical.nabu_config module
    • nabu.pipeline.helical.processconfig module
      • ProcessConfig
    • nabu.pipeline.helical.span_strategy module
      • SpanStrategy
    • nabu.pipeline.helical.weight_balancer module
      • WeightBalancer
      • shift()
  • Module contents
• nabu.pipeline.xrdct package
  • Module contents

Submodules

• nabu.pipeline.config module
  • NabuConfigParser
    • NabuConfigParser.get_dict()
  • parse_nabu_config_file()
  • generate_nabu_configfile()
  • get_default_nabu_config()
  • validate_config()
  • overwrite_config()
• nabu.pipeline.config_validators module
  • raise_error()
  • validator()
  • convert_to_int()
  • convert_to_float()
  • convert_to_bool()
  • str2bool()
  • convert_to_bool_noerr()
  • name_range_checker()
  • optional_string_validator()
  • file_name_validator()
  • file_location_validator()
  • optional_file_location_validator()
  • optional_values_file_validator()
  • directory_location_validator()
  • optional_directory_location_validator()
  • dataset_location_validator()
  • directory_writeable_validator()
  • optional_output_directory_validator()
  • optional_output_file_path_validator()
  • integer_validator()
  • nonnegative_integer_validator()
  • positive_integer_validator()
  • optional_positive_integer_validator()
  • nonzero_integer_validator()
  • binning_validator()
  • projections_subsampling_validator()
  • optional_file_name_validator()
  • boolean_validator()
  • boolean_or_auto_validator()
  • float_validator()
  • optional_float_validator()
  • optional_nonzero_float_validator()
  • optional_tuple_of_floats_validator()
  • cor_validator()
  • tilt_validator()
  • slice_num_validator()
  • generic_options_validator()
  • cor_options_validator()
  • cor_slice_validator()
  • flatfield_enabled_validator()
  • phase_method_validator()
  • detector_distortion_correction_validator()
  • unsharp_method_validator()
  • padding_mode_validator()
  • reconstruction_method_validator()
  • fbp_filter_name_validator()
  • reconstruction_implementation_validator()
  • optimization_algorithm_name_validator()
  • output_file_format_validator()
  • distribution_method_validator()
  • sino_normalization_validator()
  • sino_deringer_methods()
  • list_of_int_validator()
  • list_of_shift_validator()
  • list_of_tomoscan_identifier()
  • resources_validator()
  • walltime_validator()
  • nonempty_string_validator()
  • logging_validator()
  • exclude_projections_validator()
  • no_validator()
• nabu.pipeline.datadump module
  • DataDumpManager
    • DataDumpManager.get_data_dump()
    • DataDumpManager.get_read_dump_subregion()
    • DataDumpManager.dump_data_to_file()
• nabu.pipeline.dataset_validator module
  • DatasetValidatorBase
    • DatasetValidatorBase.is_halftomo
• nabu.pipeline.detector_distortion_provider module
  • DetectorDistortionProvider()
• nabu.pipeline.estimators module
  • estimate_cor()
  • CORFinderBase
    • CORFinderBase.search_methods
  • CORFinder
    • CORFinder.search_methods
    • CORFinder.find_cor()
  • COREstimator
  • SinoCORFinder
    • SinoCORFinder.search_methods
    • SinoCORFinder.find_cor()
  • SinoCOREstimator
  • CompositeCORFinder
    • CompositeCORFinder.search_methods
    • CompositeCORFinder.get_radio()
    • CompositeCORFinder.get_sino()
    • CompositeCORFinder.find_cor()
    • CompositeCORFinder.error_metric()
    • CompositeCORFinder.error_metric_l2()
    • CompositeCORFinder.error_metric_l1()
  • oversample()
  • CompositeCOREstimator
  • get_default_kwargs()
  • update_func_kwargs()
  • get_class_name()
  • DetectorTiltEstimator
    • DetectorTiltEstimator.default_tilt_method
    • DetectorTiltEstimator.tilt_threshold
    • DetectorTiltEstimator.find_tilt()
  • TiltFinder
• nabu.pipeline.params module
• nabu.pipeline.processconfig module
  • ProcessConfigBase
    • ProcessConfigBase.default_nabu_config
    • ProcessConfigBase.config_renamed_keys
    • ProcessConfigBase.build_processing_steps()
• nabu.pipeline.reader module
  • bin_image_stack()
  • NXTomoReaderBinning()
  • apply_distortion_correction_on_images_stack()
  • NXTomoReaderDistortionCorrection()
  • EDFStackReaderBinning()
  • apply_distortion_correction_on_image()
  • EDFStackReaderDistortionCorrection()
  • load_darks_flats()
• nabu.pipeline.utils module
  • use_options()
  • pipeline_step()
  • get_subregion()
  • EnvSettings
    • EnvSettings.skip_tomoscan_checks
• nabu.pipeline.writer module
  • WriterManager
    • WriterManager.get_first_fname()
    • WriterManager.get_fname()
    • WriterManager.write_histogram()
    • WriterManager.write_data()

Module contents